PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G270100.1
Common NameB456_006G270100, LOC105800814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 1614aa    MW: 182180 Da    PI: 9.2444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G270100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003515151537323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          Cp   Cgk F ++ +L++H r+H
  Gorai.006G270100.1 1515 CPvkGCGKKFFSHKYLVQHRRVH 1537
                          9999*****************99 PP

2zf-C2H211.60.0008415731599123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C    Cg++F+  s++ rH r+  H
  Gorai.006G270100.1 1573 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1599
                          89********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.9E-132364IPR003349JmjN domain
PROSITE profilePS5118313.3142465IPR003349JmjN domain
PfamPF023751.7E-132558IPR003349JmjN domain
SMARTSM005581.2E-48199368IPR003347JmjC domain
PROSITE profilePS5118433.68199368IPR003347JmjC domain
SuperFamilySSF511973.84E-25213382No hitNo description
PfamPF023732.9E-35232351IPR003347JmjC domain
SMARTSM003552614901512IPR015880Zinc finger, C2H2-like
SMARTSM003550.004515131537IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.44515131542IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-515141541IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015151537IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-915291571No hitNo description
Gene3DG3DSA:3.30.160.603.8E-815421567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001415431567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74115431572IPR007087Zinc finger, C2H2
PROSITE patternPS00028015451567IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-815611595No hitNo description
Gene3DG3DSA:3.30.160.603.3E-915681596IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8515731599IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80315731604IPR007087Zinc finger, C2H2
PROSITE patternPS00028015751599IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1614 aa     Download sequence    Send to blast
MAASSLSPEP SQEVFPWLKS LPFAPEYRPT LVEFQDPIAY IFKIEKEASQ YGICKIIPPV  60
PPASKKAAIG NLNRSLLERA VANASSDSKP APTFTTRQQQ IGFCPRKQRP VLKSVWQSGE  120
YYTFQEFEAK AKIFERNYLK KYSKKASLSA LEIETLFWKA TVDQPFDIEY ANDMPGSAFA  180
ALGSKKSSGG GRETGEGVTV AETPWNMRAV SRAKGSLLRF MKEEIPGVTS PMVYIAMLFS  240
WFAWHVEDHD LHSLNYLHMG AGKTWYGVPR DAAVAFEEVV RVDGYAGEFN PLVTFSTLGE  300
KTTVMSPEVF VHAGIPCCRL VQNAGEFVVT FPRAYHSGFS HGFNLGEAAN IATPEWLRVA  360
RDASIRRASI NYPPMVSHFQ LLYDLALDLC SRVPTNIGAK PKSSRLKDKK KCEGETLVKE  420
LFVQDLIQNN DLLHILGKGS SVVLLPKSST DISLSSESRI ASRLRINPKM SLGLCRYKEA  480
MKPSQVLAFD EIMQCKNEEI KGIKGFYSVK GKTVSTYEVD RDSSFTGADY LCKVPSQTLN  540
ANIERESSVQ GDTLSDQRLF TCVTCGILCF ACIAVLQPTE QAARYLMSAD CSFFNDWTFG  600
SGVTRDRFTT THGDGITSEQ NPSTRGMNKT APNALYDVPV QSVECKFQTK NQSKEVPEDT  660
KERRNTSALG LLASTYGNSS DSEDDNVEPK ATASGDETNS TNTIPGRKLQ HNDFKEEAPV  720
HVIDCDPEPG SKRSPPTINQ ELVSNGLGDK CSDPAIESYG AEKMRFSKAF ARMENADSPF  780
APNSDEDSSR MHVFCLEHAI EVEQQLRQIG GVHIFLLCHP EYPRIEAEAK LVAEELGIDY  840
LWNNILFGDA TKDDEVRIRS ALDSEDAIPG NGDWAVKLGI NLFYSSNLSH STLYSKQMPF  900
NFVIYSAFGR NSPASSPTKL NSYGRRSRKQ KKVVAGKWCG KVWMSNQVHP FLTQRDPKEQ  960
EQEKSFHAWA TSDENLESKP ENIRKAETSK VAKRFTRKSK TRAGATPSKK AKCIEPESVV  1020
SDDSLDGNSL RQQQRFFRGK KPKLIEKEKE ISYDSLEDDS LLHHRDLSRR KGAKFIEREA  1080
SESEDVEEDS DDQQFLKNLG GKQGKYIVEN DVVSGDSLDK ISAKQYRRIP RSSRDKFMKR  1140
EGSVSADEQE EISYQFHKRI PRGRQIKLFE RRLAVSDDLR ADNSLKQYRR KPKGKRAKFF  1200
EREEAMSDDA SDNDGSQTQH RRIPSGKQMK CTEREDEFSD DSLEGNPQQQ HGRIAQRKVS  1260
KFSDQEDIVS FDSLKGNSHR QHRRIPRSQL TQFIEREDAG SSDSPDDSSL QQLRRILRSK  1320
HAKILEKEDA VSDDSDDTSP QQLRKTPRSR QGKSIESEDV VSYDSSDENY GQPNSSLRSR  1380
KKKAPTPRQT KQEAPKNVKQ GKRRTTKQVI SQQSKQDTPR NRNTKIEQSA RQDNSYDEDE  1440
IEGGPSTRLR KRARKPSKEL ETKPKVKKQA LKNKAKSASN AKVRDEEAEY QCDMEGCTMS  1500
FGLKQELVLH KKNICPVKGC GKKFFSHKYL VQHRRVHMDD RPLKCPWKGC KMTFKWAWAR  1560
TEHIRVHTGA RPYVCAEEGC GQTFRFVSDF SRHKRKTGHS VKKGKIKHES RKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igq_A4e-482435216360Os05g0196500 protein
4igp_A4e-482435216360Os05g0196500 protein
4igo_A4e-482435216360Os05g0196500 protein
5fwj_B1e-47223867351HISTONE DEMETHYLASE JARID1C
5fwj_A1e-47223867351HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487613.10.0PREDICTED: lysine-specific demethylase REF6-like
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLA0A0D2S3110.0A0A0D2S311_G
STRINGPOPTR_0015s10040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]